It's getting weirder....
 

I posted about my alternator earlier, but I forgot one thing..lol

This has happened twice. My battery dies, no biggy, jump it and then my sunroof won't work.

Checked fuses, all good

Here is the weird part.

If you drive the car after the jump start, sunroof will not work. Let it sit for about 30 min to an hour, and start again and sunroof works.